snakemake — Easy Examples
Workflow management for reproducible bioinformatics pipelines
Getting started with snakemake
Installation and basic usage of snakemake.
python
# Install: pip install snakemake import snakemake # Basic snakemake usage print(f"Using snakemake") # See documentation for detailed examples
Expected Output
# Expected output shown below # (Run locally with: snakemake)
snakemake is a third-party package. Workflow management for reproducible bioinformatics pipelines. Install with: pip install snakemake
Common snakemake operations
Frequently used features of snakemake.
python
# Install: pip install snakemake import snakemake # Common snakemake patterns print(f"snakemake version: {snakemake.__version__}")
These are the most commonly used features of snakemake in everyday development.
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